{ "cells": [ { "cell_type": "markdown", "id": "9065e87a-36f6-49f6-a3d2-49095355f564", "metadata": {}, "source": [ "# Social Vulnerability Ireland - Copernicus data\n", "Processing of the Copernicus data into census output areas" ] }, { "cell_type": "markdown", "id": "17246fe7-bfca-4a51-b64d-2b337c9c239a", "metadata": {}, "source": [ "## Environment" ] }, { "cell_type": "markdown", "id": "a62367fa-e41d-47c0-be8b-b047093078e6", "metadata": {}, "source": [ "### R Libraries\n", "Any required R libraries are imported into the kernal:" ] }, { "cell_type": "code", "execution_count": 1, "id": "abb8d50e", "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "Loading required package: pacman\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "[1] \"Loaded Packages:\"\n" ] }, { "data": { "text/html": [ "\n", "
  1. 'exactextractr'
  2. 'terra'
  3. 'sf'
  4. 'pacman'
\n" ], "text/latex": [ "\\begin{enumerate*}\n", "\\item 'exactextractr'\n", "\\item 'terra'\n", "\\item 'sf'\n", "\\item 'pacman'\n", "\\end{enumerate*}\n" ], "text/markdown": [ "1. 'exactextractr'\n", "2. 'terra'\n", "3. 'sf'\n", "4. 'pacman'\n", "\n", "\n" ], "text/plain": [ "[1] \"exactextractr\" \"terra\" \"sf\" \"pacman\" " ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "# Load R libraries\n", "if(!require(\"pacman\"))\n", " install.packages(\"pacman\")\n", "\n", "p_load(\"sf\", \"terra\", \"exactextractr\")\n", "\n", "print(\"Loaded Packages:\")\n", "p_loaded()" ] }, { "cell_type": "code", "execution_count": 2, "id": "00d29245-01af-4b94-9d8e-72e2a2c194a1", "metadata": {}, "outputs": [], "source": [ "### Output directory" ] }, { "cell_type": "code", "execution_count": 3, "id": "09702b65", "metadata": {}, "outputs": [], "source": [ "# create the pipeline directory if it does not exist\n", "pipeline_dir <- file.path(\"../..\",\"2_pipeline\",\"Ireland\",\"1b_Copernicus\",\"2022\")\n", "if(!dir.exists(pipeline_dir)){\n", " dir.create(pipeline_dir, recursive = TRUE)\n", " print(paste0(pipeline_dir, \" created\"))\n", "}\n", "\n", "# set country variable which is used within the output filename\n", "country <- \"Ireland\"" ] }, { "cell_type": "markdown", "id": "7fb7048a-ed1b-4bbb-a43d-b103596ec774", "metadata": {}, "source": [ "## Process" ] }, { "cell_type": "code", "execution_count": 4, "id": "4cf607ac", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Reading layer `SMALL_AREA_2022' from data source \n", " `/Cities/0_data/boundaries/Ireland/census_small_areas/2022/SMALL_AREA_2022.shp' \n", " using driver `ESRI Shapefile'\n", "Simple feature collection with 18919 features and 28 fields\n", "Geometry type: MULTIPOLYGON\n", "Dimension: XY\n", "Bounding box: xmin: 417471.5 ymin: 519663.7 xmax: 734481.1 ymax: 966896.3\n", "Projected CRS: IRENET95 / Irish Transverse Mercator\n" ] } ], "source": [ "# Copernicus data folder\n", "copernicus_data_path <- \"../../0_data/Copernicus/Ireland\"\n", "\n", "# High resolution layers - IMPERVIOUSNESS, TREE COVER DENSITY\n", "datasets <- c(\"IMD\",\"TCD\")\n", "\n", "# census output areas\n", "census_areas <- st_read(\"../../0_data/boundaries/Ireland/census_small_areas/2022/SMALL_AREA_2022.shp\")" ] }, { "cell_type": "code", "execution_count": 5, "id": "f0e29052", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "[1] \"Processing: IMD\"\n", "[1] \"../../2_pipeline/Ireland/1b_Copernicus/2022/Ireland_IMD.tif already created\"\n", "[1] \"Processing: TCD\"\n", "[1] \"../../2_pipeline/Ireland/1b_Copernicus/2022/Ireland_TCD.tif already created\"\n" ] } ], "source": [ "# need to join copernicus tiles together\n", "for(dataset in datasets){\n", " print(paste0(\"Processing: \", dataset))\n", " flush.console()\n", "\n", " # export mosaic filepath\n", " mosaic_output_file <- paste0(pipeline_dir, \"/\", country, \"_\", dataset, \".tif\")\n", "\n", " # have the tiles been joined together already?\n", " is_mosaic_created <- file.exists(mosaic_output_file)\n", "\n", " if(is_mosaic_created){\n", " print(paste0(mosaic_output_file, \" already created\"))\n", " flush.console()\n", " } else {\n", " # Join the tiles together and export it\n", " # Get the files\n", " tiles <- list.files(copernicus_data_path, full.names = TRUE, recursive = TRUE, pattern=paste0(\".*\", dataset, \".*\\\\.tif$\")) \n", "\n", " # Create an image catalog\n", " ic <- terra::sprc(lapply(tiles, rast))\n", "\n", " # Mosic the tiles\n", " icMosaic <- mosaic(ic, filename = mosaic_output_file, fun=\"max\", overwrite=TRUE)\n", " #icMosaic <- merge(ic, filename = mosaic_output_file, overwrite=TRUE) # quicker\n", "\n", " print(paste0(mosaic_output_file, \" created\"))\n", " } \n", "}" ] }, { "cell_type": "code", "execution_count": 6, "id": "f7f1ac5b", "metadata": {}, "outputs": [ { "data": { "text/plain": [ "[1] \"2025-03-13 15:40:39 GMT\"" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stderr", "output_type": "stream", "text": [ "Warning message in .local(x, y, ...):\n", "“Polygons transformed to raster CRS (EPSG:3035)”\n", "Cannot preload entire working area of 1395265641 cells with max_cells_in_memory = 3e+07. Raster values will be read for each feature individually.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\n", " |======================================================================| 100%" ] }, { "name": "stderr", "output_type": "stream", "text": [ "Warning message in .local(x, y, ...):\n", "“Polygons transformed to raster CRS (EPSG:3035)”\n", "Cannot preload entire working area of 1395265641 cells with max_cells_in_memory = 3e+07. Raster values will be read for each feature individually.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\n", " |======================================================================| 100%" ] }, { "name": "stderr", "output_type": "stream", "text": [ "Registered S3 method overwritten by 'geojsonsf':\n", " method from \n", " print.geojson geojson\n", "\n" ] }, { "data": { "application/geo+json": { "features": [ { "geometry": { "coordinates": [ [ [ [ 673146.546, 677647.75 ], [ 673141.212, 677640.92 ], [ 673123.713, 677618.513 ], [ 673106.042, 677595.792 ], [ 673095.729, 677582.532 ], [ 673080.79, 677554.968 ], [ 673073.056, 677537.865 ], [ 673064.329, 677518.567 ], [ 673050.885, 677490.484 ], [ 673034.98, 677456.043 ], [ 673029.249, 677443.825 ], [ 673026.526, 677438.855 ], [ 673002.141, 677394.348 ], [ 672996.97, 677383.605 ], [ 672984.97, 677357.64 ], [ 672955.836, 677303.546 ], [ 672955.655, 677303.209 ], [ 672946.827, 677287.702 ], [ 672915.016, 677225.588 ], [ 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A sf: 6 × 33
OBJECTIDSA_GUID_20SA_GUID__1SA_PUB2011SA_PUB2016SA_PUB2022SA_GEOGID_SA_CHANGE_SA_URBAN_ASA_URBAN_1geometry⋯COUNTY_ENGCOUNTY_GAECSO_LEASHAPE_LengSHAPE_Areageometrycell_area_m2imp_area_m2imp_percentimpervious
<int><chr><chr><chr><chr><chr><chr><int><int><chr>⋯<chr><chr><chr><dbl><dbl><MULTIPOLYGON [m]><dbl><dbl><dbl><dbl[,1]>
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\n" ], "text/latex": [ "A sf: 6 × 33\n", "\\begin{tabular}{r|lllllllllllllllllllll}\n", " & OBJECTID & SA\\_GUID\\_20 & SA\\_GUID\\_\\_1 & SA\\_PUB2011 & SA\\_PUB2016 & SA\\_PUB2022 & SA\\_GEOGID\\_ & SA\\_CHANGE\\_ & SA\\_URBAN\\_A & SA\\_URBAN\\_1 & geometry & ⋯ & COUNTY\\_ENG & COUNTY\\_GAE & CSO\\_LEA & SHAPE\\_Leng & SHAPE\\_Area & geometry & cell\\_area\\_m2 & imp\\_area\\_m2 & imp\\_percent & impervious\\\\\n", " & & & & & & & & & & & ⋯ & & & & & & & & & & \\\\\n", "\\hline\n", "\t1 & 1 & 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f & 017010016 & 017010016 & 017010016 & A017010016 & 0 & 1 & Carlow & MULTIPOLYGON (((673146.5 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2123.346 & 204944.2 & MULTIPOLYGON (((673146.5 67... & 204991.3 & 75945.95 & 37.048 & 0.4175754\\\\\n", "\t2 & 2 & 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f & 017010046 & 017010046 & 017010046 & A017010046 & 4 & 1 & Carlow & MULTIPOLYGON (((673956.3 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2891.271 & 288225.4 & MULTIPOLYGON (((673956.3 67... & 288290.4 & 57333.25 & 19.887 & -0.2955289\\\\\n", "\t3 & 3 & 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f & 017010037 & 017010037 & 017010037 & A017010037 & 0 & 1 & Carlow & MULTIPOLYGON (((673720.6 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2436.986 & 208426.9 & MULTIPOLYGON (((673720.6 67... & 208474.4 & 69274.20 & 33.229 & 0.2588815\\\\\n", "\t4 & 4 & 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f & 017010005 & 017010005 & 017010005 & A017010005 & 0 & 1 & Carlow & MULTIPOLYGON (((671923.3 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2887.091 & 348798.6 & MULTIPOLYGON (((671923.3 67... & 348880.3 & 109519.96 & 31.392 & 0.1825472\\\\\n", "\t5 & 5 & 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f & 017010036 & 017010036 & 017010036 & A017010036 & 0 & 1 & Carlow & MULTIPOLYGON (((673711.8 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2844.410 & 429349.1 & MULTIPOLYGON (((673711.8 67... & 429446.9 & 209251.55 & 48.726 & 0.9028403\\\\\n", "\t6 & 6 & 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f & 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f & 017010009 & 017010009 & 017010009 & A017010009 & 4 & 1 & Carlow & MULTIPOLYGON (((673488.5 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 1058.290 & 59299.2 & MULTIPOLYGON (((673488.5 67... & 59312.7 & 18759.59 & 31.628 & 0.1923539\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A sf: 6 × 33\n", "\n", "| | OBJECTID <int> | SA_GUID_20 <chr> | SA_GUID__1 <chr> | SA_PUB2011 <chr> | SA_PUB2016 <chr> | SA_PUB2022 <chr> | SA_GEOGID_ <chr> | SA_CHANGE_ <int> | SA_URBAN_A <int> | SA_URBAN_1 <chr> | geometry ⋯ | ⋯ <chr> | COUNTY_ENG <chr> | COUNTY_GAE <chr> | CSO_LEA <dbl> | SHAPE_Leng <dbl> | SHAPE_Area <MULTIPOLYGON [m]> | geometry <dbl> | cell_area_m2 <dbl> | imp_area_m2 <dbl> | imp_percent <dbl[,1]> | impervious <int> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| 1 | 1 | 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f | 017010016 | 017010016 | 017010016 | A017010016 | 0 | 1 | Carlow | MULTIPOLYGON (((673146.5 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2123.346 | 204944.2 | MULTIPOLYGON (((673146.5 67... | 204991.3 | 75945.95 | 37.048 | 0.4175754 |\n", "| 2 | 2 | 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f | 017010046 | 017010046 | 017010046 | A017010046 | 4 | 1 | Carlow | MULTIPOLYGON (((673956.3 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2891.271 | 288225.4 | MULTIPOLYGON (((673956.3 67... | 288290.4 | 57333.25 | 19.887 | -0.2955289 |\n", "| 3 | 3 | 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f | 017010037 | 017010037 | 017010037 | A017010037 | 0 | 1 | Carlow | MULTIPOLYGON (((673720.6 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2436.986 | 208426.9 | MULTIPOLYGON (((673720.6 67... | 208474.4 | 69274.20 | 33.229 | 0.2588815 |\n", "| 4 | 4 | 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f | 017010005 | 017010005 | 017010005 | A017010005 | 0 | 1 | Carlow | MULTIPOLYGON (((671923.3 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2887.091 | 348798.6 | MULTIPOLYGON (((671923.3 67... | 348880.3 | 109519.96 | 31.392 | 0.1825472 |\n", "| 5 | 5 | 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f | 017010036 | 017010036 | 017010036 | A017010036 | 0 | 1 | Carlow | MULTIPOLYGON (((673711.8 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2844.410 | 429349.1 | MULTIPOLYGON (((673711.8 67... | 429446.9 | 209251.55 | 48.726 | 0.9028403 |\n", "| 6 | 6 | 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f | 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f | 017010009 | 017010009 | 017010009 | A017010009 | 4 | 1 | Carlow | MULTIPOLYGON (((673488.5 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 1058.290 | 59299.2 | MULTIPOLYGON (((673488.5 67... | 59312.7 | 18759.59 | 31.628 | 0.1923539 |\n", "\n" ], "text/plain": [ " OBJECTID SA_GUID_20 \n", "1 1 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f\n", "2 2 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f\n", "3 3 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f\n", "4 4 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f\n", "5 5 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f\n", "6 6 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f\n", " SA_GUID__1 SA_PUB2011 SA_PUB2016 SA_PUB2022\n", "1 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f 017010016 017010016 017010016 \n", "2 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f 017010046 017010046 017010046 \n", "3 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f 017010037 017010037 017010037 \n", "4 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f 017010005 017010005 017010005 \n", "5 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f 017010036 017010036 017010036 \n", "6 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f 017010009 017010009 017010009 \n", " SA_GEOGID_ SA_CHANGE_ SA_URBAN_A SA_URBAN_1 geometry ⋯\n", "1 A017010016 0 1 Carlow MULTIPOLYGON (((673146.5 67... ⋯\n", "2 A017010046 4 1 Carlow MULTIPOLYGON (((673956.3 67... ⋯\n", "3 A017010037 0 1 Carlow MULTIPOLYGON (((673720.6 67... ⋯\n", "4 A017010005 0 1 Carlow MULTIPOLYGON (((671923.3 67... ⋯\n", "5 A017010036 0 1 Carlow MULTIPOLYGON (((673711.8 67... ⋯\n", "6 A017010009 4 1 Carlow MULTIPOLYGON (((673488.5 67... ⋯\n", " COUNTY_ENG COUNTY_GAE CSO_LEA SHAPE_Leng SHAPE_Area\n", "1 CARLOW Ceatharlach CARLOW 2123.346 204944.2 \n", "2 CARLOW Ceatharlach CARLOW 2891.271 288225.4 \n", "3 CARLOW Ceatharlach CARLOW 2436.986 208426.9 \n", "4 CARLOW Ceatharlach CARLOW 2887.091 348798.6 \n", "5 CARLOW Ceatharlach CARLOW 2844.410 429349.1 \n", "6 CARLOW Ceatharlach CARLOW 1058.290 59299.2 \n", " geometry cell_area_m2 imp_area_m2 imp_percent\n", "1 MULTIPOLYGON (((673146.5 67... 204991.3 75945.95 37.048 \n", "2 MULTIPOLYGON (((673956.3 67... 288290.4 57333.25 19.887 \n", "3 MULTIPOLYGON (((673720.6 67... 208474.4 69274.20 33.229 \n", "4 MULTIPOLYGON (((671923.3 67... 348880.3 109519.96 31.392 \n", "5 MULTIPOLYGON (((673711.8 67... 429446.9 209251.55 48.726 \n", "6 MULTIPOLYGON (((673488.5 67... 59312.7 18759.59 31.628 \n", " impervious\n", "1 0.4175754\n", "2 -0.2955289\n", "3 0.2588815\n", "4 0.1825472\n", "5 0.9028403\n", "6 0.1923539" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/plain": [ "[1] \"2025-03-13 15:52:17 GMT\"" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "Sys.time()\n", "census_areas_impervious <- census_areas\n", "\n", "# Impervious surface\n", "copRaster <- rast(paste0(pipeline_dir, \"/\", country, \"_\", \"IMD\", \".tif\"))\n", "\n", "# calculate the area of the raster cell (m2)\n", "cellArea <- res(copRaster)[1]*res(copRaster)[2]\n", "\n", "# calculate the number of cells within each output area\n", "census_areas_impervious$cell_area_m2 <- exact_extract(copRaster, census_areas_impervious, 'count', coverage_area = TRUE, progress = TRUE)\n", "\n", "# calculate the area of each output area that is impervious\n", "census_areas_impervious$imp_area_m2 <- exact_extract(copRaster, census_areas_impervious, 'sum', progress = TRUE)\n", "\n", "# calculate the percentage of each output area that is impervious\n", "census_areas_impervious$imp_percent <- round((census_areas_impervious$imp_area_m2/census_areas_impervious$cell_area_m2)*100, 3)\n", "\n", "# calculate Z score\n", "census_areas_impervious$impervious <- scale(census_areas_impervious$imp_percent)\n", "\n", "head(census_areas_impervious)\n", "Sys.time()" ] }, { "cell_type": "code", "execution_count": 7, "id": "ecef30ee", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Deleting source `../../2_pipeline/Ireland/1b_Copernicus/2022/census_areas_IMD.geojson' using driver `GeoJSON'\n", "Writing layer `census_areas_IMD' to data source \n", " `../../2_pipeline/Ireland/1b_Copernicus/2022/census_areas_IMD.geojson' using driver `GeoJSON'\n", "Writing 18919 features with 32 fields and geometry type Multi Polygon.\n" ] } ], "source": [ "# output the impervious data as a geojson\n", "st_write(census_areas_impervious, file.path(pipeline_dir, \"census_areas_IMD.geojson\"), delete_dsn = TRUE)" ] }, { "cell_type": "code", "execution_count": 8, "id": "bea93c90", "metadata": {}, "outputs": [ { "data": { "text/plain": [ "[1] \"2025-03-13 15:53:31 GMT\"" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stderr", "output_type": "stream", "text": [ "Warning message in .local(x, y, ...):\n", "“Polygons transformed to raster CRS (EPSG:3035)”\n", "Cannot preload entire working area of 1395265641 cells with max_cells_in_memory = 3e+07. Raster values will be read for each feature individually.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\n", " |======================================================================| 100%" ] }, { "name": "stderr", "output_type": "stream", "text": [ "Warning message in .local(x, y, ...):\n", "“Polygons transformed to raster CRS (EPSG:3035)”\n", "Cannot preload entire working area of 1395265641 cells with max_cells_in_memory = 3e+07. Raster values will be read for each feature individually.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\n", " |======================================================================| 100%" ] }, { "data": { "application/geo+json": { "features": [ { "geometry": { "coordinates": [ [ [ [ 673146.546, 677647.75 ], [ 673141.212, 677640.92 ], [ 673123.713, 677618.513 ], [ 673106.042, 677595.792 ], [ 673095.729, 677582.532 ], [ 673080.79, 677554.968 ], [ 673073.056, 677537.865 ], [ 673064.329, 677518.567 ], [ 673050.885, 677490.484 ], [ 673034.98, 677456.043 ], [ 673029.249, 677443.825 ], [ 673026.526, 677438.855 ], [ 673002.141, 677394.348 ], [ 672996.97, 677383.605 ], [ 672984.97, 677357.64 ], [ 672955.836, 677303.546 ], [ 672955.655, 677303.209 ], [ 672946.827, 677287.702 ], [ 672915.016, 677225.588 ], [ 672885.036, 677175.635 ], [ 672884.667, 677175.021 ], [ 672875.333, 677155.49 ], [ 672863.132, 677132.144 ], [ 672854.144, 677116.62 ], [ 672834.829, 677087.687 ], [ 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A sf: 6 × 33
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<int><chr><chr><chr><chr><chr><chr><int><int><chr>⋯<chr><chr><chr><dbl><dbl><MULTIPOLYGON [m]><dbl><dbl><dbl><dbl[,1]>
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\n" ], "text/latex": [ "A sf: 6 × 33\n", "\\begin{tabular}{r|lllllllllllllllllllll}\n", " & OBJECTID & SA\\_GUID\\_20 & SA\\_GUID\\_\\_1 & SA\\_PUB2011 & SA\\_PUB2016 & SA\\_PUB2022 & SA\\_GEOGID\\_ & SA\\_CHANGE\\_ & SA\\_URBAN\\_A & SA\\_URBAN\\_1 & geometry & ⋯ & COUNTY\\_ENG & COUNTY\\_GAE & CSO\\_LEA & SHAPE\\_Leng & SHAPE\\_Area & geometry & cell\\_area\\_m2 & tcd\\_area\\_m2 & tcd\\_percent & tree\\_cover\\_density\\\\\n", " & & & & & & & & & & & ⋯ & & & & & & & & & & \\\\\n", "\\hline\n", "\t1 & 1 & 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f & 017010016 & 017010016 & 017010016 & A017010016 & 0 & 1 & Carlow & MULTIPOLYGON (((673146.5 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2123.346 & 204944.2 & MULTIPOLYGON (((673146.5 67... & 204991.3 & 202.7830 & 0.099 & 0.7831503\\\\\n", "\t2 & 2 & 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f & 017010046 & 017010046 & 017010046 & A017010046 & 4 & 1 & Carlow & MULTIPOLYGON (((673956.3 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2891.271 & 288225.4 & MULTIPOLYGON (((673956.3 67... & 288290.4 & 961.1264 & 0.333 & 0.7459016\\\\\n", "\t3 & 3 & 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f & 017010037 & 017010037 & 017010037 & A017010037 & 0 & 1 & Carlow & MULTIPOLYGON (((673720.6 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2436.986 & 208426.9 & MULTIPOLYGON (((673720.6 67... & 208474.4 & 968.9902 & 0.465 & 0.7248895\\\\\n", "\t4 & 4 & 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f & 017010005 & 017010005 & 017010005 & A017010005 & 0 & 1 & Carlow & MULTIPOLYGON (((671923.3 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2887.091 & 348798.6 & MULTIPOLYGON (((671923.3 67... & 348880.3 & 26616.5039 & 7.629 & -0.4154939\\\\\n", "\t5 & 5 & 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f & 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f & 017010036 & 017010036 & 017010036 & A017010036 & 0 & 1 & Carlow & MULTIPOLYGON (((673711.8 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 2844.410 & 429349.1 & MULTIPOLYGON (((673711.8 67... & 429446.9 & 11372.1279 & 2.648 & 0.3773941\\\\\n", "\t6 & 6 & 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f & 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f & 017010009 & 017010009 & 017010009 & A017010009 & 4 & 1 & Carlow & MULTIPOLYGON (((673488.5 67... & ⋯ & CARLOW & Ceatharlach & CARLOW & 1058.290 & 59299.2 & MULTIPOLYGON (((673488.5 67... & 59312.7 & 107.7513 & 0.182 & 0.7699382\\\\\n", "\\end{tabular}\n" ], "text/markdown": [ "\n", "A sf: 6 × 33\n", "\n", "| | OBJECTID <int> | SA_GUID_20 <chr> | SA_GUID__1 <chr> | SA_PUB2011 <chr> | SA_PUB2016 <chr> | SA_PUB2022 <chr> | SA_GEOGID_ <chr> | SA_CHANGE_ <int> | SA_URBAN_A <int> | SA_URBAN_1 <chr> | geometry ⋯ | ⋯ <chr> | COUNTY_ENG <chr> | COUNTY_GAE <chr> | CSO_LEA <dbl> | SHAPE_Leng <dbl> | SHAPE_Area <MULTIPOLYGON [m]> | geometry <dbl> | cell_area_m2 <dbl> | tcd_area_m2 <dbl> | tcd_percent <dbl[,1]> | tree_cover_density <int> |\n", "|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|\n", "| 1 | 1 | 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f | 017010016 | 017010016 | 017010016 | A017010016 | 0 | 1 | Carlow | MULTIPOLYGON (((673146.5 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2123.346 | 204944.2 | MULTIPOLYGON (((673146.5 67... | 204991.3 | 202.7830 | 0.099 | 0.7831503 |\n", "| 2 | 2 | 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f | 017010046 | 017010046 | 017010046 | A017010046 | 4 | 1 | Carlow | MULTIPOLYGON (((673956.3 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2891.271 | 288225.4 | MULTIPOLYGON (((673956.3 67... | 288290.4 | 961.1264 | 0.333 | 0.7459016 |\n", "| 3 | 3 | 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f | 017010037 | 017010037 | 017010037 | A017010037 | 0 | 1 | Carlow | MULTIPOLYGON (((673720.6 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2436.986 | 208426.9 | MULTIPOLYGON (((673720.6 67... | 208474.4 | 968.9902 | 0.465 | 0.7248895 |\n", "| 4 | 4 | 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f | 017010005 | 017010005 | 017010005 | A017010005 | 0 | 1 | Carlow | MULTIPOLYGON (((671923.3 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2887.091 | 348798.6 | MULTIPOLYGON (((671923.3 67... | 348880.3 | 26616.5039 | 7.629 | -0.4154939 |\n", "| 5 | 5 | 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f | 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f | 017010036 | 017010036 | 017010036 | A017010036 | 0 | 1 | Carlow | MULTIPOLYGON (((673711.8 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 2844.410 | 429349.1 | MULTIPOLYGON (((673711.8 67... | 429446.9 | 11372.1279 | 2.648 | 0.3773941 |\n", "| 6 | 6 | 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f | 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f | 017010009 | 017010009 | 017010009 | A017010009 | 4 | 1 | Carlow | MULTIPOLYGON (((673488.5 67... | ⋯ | CARLOW | Ceatharlach | CARLOW | 1058.290 | 59299.2 | MULTIPOLYGON (((673488.5 67... | 59312.7 | 107.7513 | 0.182 | 0.7699382 |\n", "\n" ], "text/plain": [ " OBJECTID SA_GUID_20 \n", "1 1 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f\n", "2 2 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f\n", "3 3 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f\n", "4 4 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f\n", "5 5 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f\n", "6 6 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f\n", " SA_GUID__1 SA_PUB2011 SA_PUB2016 SA_PUB2022\n", "1 4c07d11e-0a4f-851d-e053-ca3ca8c0ca7f 017010016 017010016 017010016 \n", "2 4c07d11e-0a3a-851d-e053-ca3ca8c0ca7f 017010046 017010046 017010046 \n", "3 4c07d11e-0a4e-851d-e053-ca3ca8c0ca7f 017010037 017010037 017010037 \n", "4 4c07d11e-0a25-851d-e053-ca3ca8c0ca7f 017010005 017010005 017010005 \n", "5 4c07d11e-0a57-851d-e053-ca3ca8c0ca7f 017010036 017010036 017010036 \n", "6 4c07d11e-2df2-851d-e053-ca3ca8c0ca7f 017010009 017010009 017010009 \n", " SA_GEOGID_ SA_CHANGE_ SA_URBAN_A SA_URBAN_1 geometry ⋯\n", "1 A017010016 0 1 Carlow MULTIPOLYGON (((673146.5 67... ⋯\n", "2 A017010046 4 1 Carlow MULTIPOLYGON (((673956.3 67... ⋯\n", "3 A017010037 0 1 Carlow MULTIPOLYGON (((673720.6 67... ⋯\n", "4 A017010005 0 1 Carlow MULTIPOLYGON (((671923.3 67... ⋯\n", "5 A017010036 0 1 Carlow MULTIPOLYGON (((673711.8 67... ⋯\n", "6 A017010009 4 1 Carlow MULTIPOLYGON (((673488.5 67... ⋯\n", " COUNTY_ENG COUNTY_GAE CSO_LEA SHAPE_Leng SHAPE_Area\n", "1 CARLOW Ceatharlach CARLOW 2123.346 204944.2 \n", "2 CARLOW Ceatharlach CARLOW 2891.271 288225.4 \n", "3 CARLOW Ceatharlach CARLOW 2436.986 208426.9 \n", "4 CARLOW Ceatharlach CARLOW 2887.091 348798.6 \n", "5 CARLOW Ceatharlach CARLOW 2844.410 429349.1 \n", "6 CARLOW Ceatharlach CARLOW 1058.290 59299.2 \n", " geometry cell_area_m2 tcd_area_m2 tcd_percent\n", "1 MULTIPOLYGON (((673146.5 67... 204991.3 202.7830 0.099 \n", "2 MULTIPOLYGON (((673956.3 67... 288290.4 961.1264 0.333 \n", "3 MULTIPOLYGON (((673720.6 67... 208474.4 968.9902 0.465 \n", "4 MULTIPOLYGON (((671923.3 67... 348880.3 26616.5039 7.629 \n", "5 MULTIPOLYGON (((673711.8 67... 429446.9 11372.1279 2.648 \n", "6 MULTIPOLYGON (((673488.5 67... 59312.7 107.7513 0.182 \n", " tree_cover_density\n", "1 0.7831503 \n", "2 0.7459016 \n", "3 0.7248895 \n", "4 -0.4154939 \n", "5 0.3773941 \n", "6 0.7699382 " ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/plain": [ "[1] \"2025-03-13 16:07:43 GMT\"" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "Sys.time()\n", "census_areas_tree_cover <- census_areas\n", "\n", "# TREE COVER DENSITY\n", "# cell size = 100 m2, therefore a percentage value directly equals m2, i.e. 100% coverage = 100 m2 area of impervious surface\n", "copRaster <- rast(paste0(pipeline_dir, \"/\", country, \"_\", \"TCD\", \".tif\"))\n", "\n", "# calculate the area of the raster cell (m2)\n", "cellArea <- res(copRaster)[1]*res(copRaster)[2]\n", "\n", "# calculate the number of cells within each output area\n", "census_areas_tree_cover$cell_area_m2 <- exact_extract(copRaster, census_areas_tree_cover, 'count', coverage_area = TRUE, progress = TRUE)\n", "\n", "# calculate the area of each output area that has tree cover\n", "census_areas_tree_cover$tcd_area_m2 <- exact_extract(copRaster, census_areas_tree_cover, 'sum', progress = TRUE)\n", "\n", "# calculate the percentage of each output area that has tree cover\n", "census_areas_tree_cover$tcd_percent <- round((census_areas_tree_cover$tcd_area_m2/census_areas_tree_cover$cell_area_m2)*100, 3)\n", "\n", "# calculate Z score\n", "census_areas_tree_cover$tree_cover_density <- -scale(census_areas_tree_cover$tcd_percent)\n", "\n", "head(census_areas_tree_cover)\n", "Sys.time()" ] }, { "cell_type": "markdown", "id": "4c7b45ca-98c0-4fd7-ace7-db0c526ca01e", "metadata": {}, "source": [ "## Export" ] }, { "cell_type": "code", "execution_count": 9, "id": "f0bc25eb", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Deleting source `../../2_pipeline/Ireland/1b_Copernicus/2022/census_areas_TCD.geojson' using driver `GeoJSON'\n", "Writing layer `census_areas_TCD' to data source \n", " `../../2_pipeline/Ireland/1b_Copernicus/2022/census_areas_TCD.geojson' using driver `GeoJSON'\n", "Writing 18919 features with 32 fields and geometry type Multi Polygon.\n" ] } ], "source": [ "# output the tree cover density data as a geojson\n", "st_write(census_areas_tree_cover, file.path(pipeline_dir, \"census_areas_TCD.geojson\"), delete_dsn = TRUE)" ] }, { "cell_type": "markdown", "id": "90b4c24a-8695-4340-b3bc-46b63dabc967", "metadata": {}, "source": [ "**END**" ] } ], "metadata": { "kernelspec": { "display_name": "R", "language": "R", "name": "ir" }, "language_info": { "codemirror_mode": "r", "file_extension": ".r", "mimetype": "text/x-r-source", "name": "R", "pygments_lexer": "r", "version": "4.3.3" } }, "nbformat": 4, "nbformat_minor": 5 }